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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16998328_17001203_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16998328 - 17001203
Intron Length:
2876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
GCGTTGCTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTGAC
U12 Branch Point Sequence:
TTCCCCCGAAAT
Flanking Amino Acid:
NGGPLYSQNSISIAPPPPPM
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76
34.8
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
63.8
0.31
1.1
55
44.7
Minor 5ss
50.5
0.02
2.7
68.2
36.7
Minor BPS
49.4
0.04
1.9
73
42.9

Associated Gene:

Gene:
ABI1
Ensembl Gene ID:
ENSAPLG00000011841
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012332
16931895 - 17007586
75692
ENSAPLT00000041398
16931895 - 17007586
75692
ENSAPLT00000039690
16937037 - 17007586
70550
ENSAPLT00000020616
16937037 - 17007586
70550