About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16998328_17005493_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16998328 - 17005493
Intron Length:
7166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CCAACGTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAAAA
Flanking Amino Acid:
NGGPLYSQNSIADSPTPPPP
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76
34.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
67.8
0.4
1
57
43
Minor 5ss
50.5
0.02
2.7
68.2
36.7
Minor BPS
58.9
0.27
2.1
78.09
38.1

Associated Gene:

Gene:
ABI1
Ensembl Gene ID:
ENSAPLG00000011841
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039702
16931895 - 17007586
75692