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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17001291_17005493_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17001291 - 17005493
Intron Length:
4203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
CCAACGTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAAAA
Flanking Amino Acid:
TGFVARVQENIADSPTPPPP
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
67.8
0.4
1
57
43
Minor 5ss
40
-1.1
3
56
42.1
Minor BPS
58.9
0.27
2.1
78.09
38.1

Associated Gene:

Gene:
ABI1
Ensembl Gene ID:
ENSAPLG00000011841
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039690
16937037 - 17007586
70550
ENSAPLT00000024780
16931895 - 17007586
75692
ENSAPLT00000020616
16937037 - 17007586
70550
ENSAPLT00000012332
16931895 - 17007586
75692
ENSAPLT00000041398
16931895 - 17007586
75692