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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17013815_17013988_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17013815 - 17013988
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGCTT
5'SS Class:
major
3'SS Sequence:
TATCTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CCTGCCTTAAGT
Flanking Amino Acid:
YGKNVGIAFQLIDDVLDFTS
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
66.2
44.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.6
0.8
0.8
77.4
36.5
Minor 5ss
35.4
-1.7
3.8
55.9
48.3
Minor BPS
62.8
0.48
1.8
75
47.8

Associated Gene:

Gene:
PDSS1
Ensembl Gene ID:
ENSAPLG00000011581
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012115
17008713 - 17032380
23668