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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17020778_17020865_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17020778 - 17020865
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TGCACATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AAACCCACAAAT
Flanking Amino Acid:
LTQVIEDLVRGEFLQLGSKE
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
74.8
35.7
Major BPS
62
0.3
1
62.3
30.4
Major PPT
69.9
0.45
0.9
66.3
39.7
Minor 5ss
39.5
-1.2
3.3
53.8
44.4
Minor BPS
45.6
-0.2
1.8
61.78
40.5

Associated Gene:

Gene:
PDSS1
Ensembl Gene ID:
ENSAPLG00000011581
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012115
17008713 - 17032380
23668