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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17021887_17028974_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17021887 - 17028974
Intron Length:
7088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTAATTAAAT
Flanking Amino Acid:
RACNIHHSNSREVQASQRSV
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.1
0.9
0.7
90.1
24.5
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
60.9
0.42
1.9
82.66
37.4

Associated Gene:

Gene:
PDSS1
Ensembl Gene ID:
ENSAPLG00000011581
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012115
17008713 - 17032380
23668