Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17032733_17033901_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17032733 - 17033901

Intron Length:

1169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTACGCTGC

5'SS Class:

major

3'SS Sequence:

TTTTTGTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TATTTTTTAAAC

Flanking Amino Acid:

LWGLSSDSLIDSFPIDPIQE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

1.1

64.3

43.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

92.5

0.96

0.7

87.5

Minor 5ss

43.1

-0.8

3.1

59.3

45.4

Minor BPS

71.3

0.65

1.3

76.34

33.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039026

17032522 - 17054251

21730

ENSAPLT00000044169

17032522 - 17048752

16231