Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17040676_17041952_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17040676 - 17041952

Intron Length:

1277

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGATTT

5'SS Class:

major

3'SS Sequence:

TCTCATATTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAT

U12 Branch Point Sequence:

TTTTATGTAATG

Flanking Amino Acid:

LAHSGELDLQRRLLDFIIQE

Intron Amino Acid Position:

279

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

1.1

75.4

34.8

Major BPS

86.1

0.9

0.7

85.7

22.9

Major PPT

79.6

0.67

0.9

72.9

35.8

Minor 5ss

46.3

-0.4

2.8

65.6

45.6

Minor BPS

-0

2.2

67.74

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039026

17032522 - 17054251

21730

ENSAPLT00000044169

17032522 - 17048752

16231