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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17047443_17048351_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17047443 - 17048351
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
CACACACCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTATAT
U12 Branch Point Sequence:
CTATCTATATAC
Flanking Amino Acid:
WVSMYLLRLEHRKQKLFGIY
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
66.7
0.41
1.1
63.2
42.8
Major PPT
63.9
0.31
0.9
55
34.9
Minor 5ss
40
-1.1
3
56
42.1
Minor BPS
45.9
-0.3
1.9
57.26
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023737
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044169
17032522 - 17048752
16231