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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17047443_17048708_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17047443 - 17048708
Intron Length:
1266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTTTATATTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATAT
Flanking Amino Acid:
WVSMYLLRLEHNKGDTDVKR
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83
0.74
0.8
82.8
32.8
Minor 5ss
40
-1.1
3
56
42.1
Minor BPS
58.4
0.34
1.7
76.23
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023737
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039026
17032522 - 17054251
21730