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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17048508_17048708_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
17048508 - 17048708
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATATTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATAT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.7
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83
0.74
0.8
82.8
32.8
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
58.4
0.34
1.7
76.23
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023737
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044169
17032522 - 17048752
16231