About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17067513_17079914_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17067513 - 17079914
Intron Length:
12402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TAATATCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATACCATGAATT
Flanking Amino Acid:
APTDHCFVLKHPQIQKESQY
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.8
0.6
0.9
69.6
40.9
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
53
0.17
1.7
71.66
38.4

Associated Gene:

Gene:
APBB1IP
Ensembl Gene ID:
ENSAPLG00000011179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011661
17062439 - 17107599
45161