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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17080026_17083667_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17080026 - 17083667
Intron Length:
3642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGAAG
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTGTTCTAACA
Flanking Amino Acid:
IYYVPKGKTKTSRDLACFIQ
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.3
69.6
42.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
27
-2.6
2.9
30.6
42.9
Minor BPS
60.1
0.31
1.7
75.11
36.7

Associated Gene:

Gene:
APBB1IP
Ensembl Gene ID:
ENSAPLG00000011179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011661
17062439 - 17107599
45161