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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17096179_17097407_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17096179 - 17097407
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTGTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTCTGTGACT
Flanking Amino Acid:
EKLKEAKVKKLVVKVHMYDN
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
72.7
0.51
0.9
69.3
36.3
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
62.1
0.46
2
82.48
39.6

Associated Gene:

Gene:
APBB1IP
Ensembl Gene ID:
ENSAPLG00000011179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011661
17062439 - 17107599
45161