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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17101740_17103562_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17101740 - 17103562
Intron Length:
1823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CATTTTTTGATT
Flanking Amino Acid:
SFTVGFKDLNESLSALEDKD
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.1
37.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87.2
0.84
0.8
81.2
34.8
Minor 5ss
37.9
-1.4
2.8
52.3
44.3
Minor BPS
65.1
0.56
1.2
74.42
37.1

Associated Gene:

Gene:
APBB1IP
Ensembl Gene ID:
ENSAPLG00000011179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011661
17062439 - 17107599
45161