Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17127317_17129570_F

Intron Information:

Intron Rank:

144476

Intron Class:

major

Intron Phase:

Intron Coordinates:

17127317 - 17129570

Intron Length:

2254

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGAAC

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGAAAA

U12 Branch Point Sequence:

GGGACCTTGACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

38.2

Major BPS

49.7

-0

1.1

36.4

Major PPT

0.88

0.6

84.5

23.3

Minor 5ss

31.2

-2.2

3.4

41.6

45.4

Minor BPS

63.5

0.41

1.4

64.42

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027854

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035451

17127288 - 17132162

4875