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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17142461_17142568_F

Intron Information:

Intron Rank:
130985
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
17142461 - 17142568
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCCTCAA
5'SS Class:
weak_major
3'SS Sequence:
TTTTCCCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.5
0.22
1.4
57.3
43.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.9
0.81
0.7
81.2
23.8
Minor 5ss
34.4
-1.8
2.9
42.1
44.4
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038711
17142123 - 17144306
2184
ENSAPLT00000033018
17142123 - 17157679
15557
ENSAPLT00000046006
17142123 - 17144402
2280