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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17143128_17144253_F

Intron Information:

Intron Rank:
130990
Intron Class:
major
Intron Phase:
Intron Coordinates:
17143128 - 17144253
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGGTG
5'SS Class:
major
3'SS Sequence:
CCTTTTGCAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
ATTACCATACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
64.1
42.1
Major BPS
72.8
0.57
1
81
30.3
Major PPT
61.8
0.27
1.1
63.7
36
Minor 5ss
26.3
-2.7
3.7
36.9
47.7
Minor BPS
57.2
0.31
2
80.5
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038711
17142123 - 17144306
2184