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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17145700_17146598_F

Intron Information:

Intron Rank:
130818
Intron Class:
major
Intron Phase:
Intron Coordinates:
17145700 - 17146598
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
CTTTCCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
75
0.62
1.1
77.2
36
Major PPT
79.5
0.66
0.8
77.3
30.2
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
73
0.8
1.7
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020226
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047195
17144643 - 17146862
2220