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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17168564_17170879_R

Intron Information:

Intron Rank:
140808
Intron Class:
major
Intron Phase:
Intron Coordinates:
17168564 - 17170879
Intron Length:
2316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTAAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ACTTCATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
70
0.45
1
66.9
37.3
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
71.9
0.77
1.5
83.58
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023151
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035115
17165030 - 17171142
6113