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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17204206_17205956_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17204206 - 17205956
Intron Length:
1751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTATAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGGAAT
U12 Branch Point Sequence:
TGTTTCTATAAG
Flanking Amino Acid:
QCSALLVREEGLMQSCNQMH
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
71.5
38.6
Major BPS
45.8
-0.2
1.4
51
41.5
Major PPT
66.9
0.38
1.1
72.7
36.6
Minor 5ss
41.6
-0.9
2.7
54
43.2
Minor BPS
46.1
-0.4
2.1
56.75
44.4

Associated Gene:

Gene:
GAD2
Ensembl Gene ID:
ENSAPLG00000007020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007320
17199035 - 17235371
36337