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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17206036_17209787_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17206036 - 17209787
Intron Length:
3752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTGAA
U12 Branch Point Sequence:
AGTATCTGAGCT
Flanking Amino Acid:
KHKWKLNGVERANSVTWNPH
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
63.2
0.33
1.1
55.1
42.1
Major PPT
81.3
0.7
0.8
73.3
37.1
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
49.7
0.06
1.7
69.04
41.2

Associated Gene:

Gene:
GAD2
Ensembl Gene ID:
ENSAPLG00000007020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007320
17199035 - 17235371
36337