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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17209853_17210958_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17209853 - 17210958
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
TTCCCATTAAGA
Flanking Amino Acid:
KKYKIWMHVDGAWGGGLLMS
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
78.4
0.64
0.8
70
36.6
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
56.3
0.2
1.9
70.02
42

Associated Gene:

Gene:
GAD2
Ensembl Gene ID:
ENSAPLG00000007020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007320
17199035 - 17235371
36337