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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17211076_17212434_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17211076 - 17212434
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
CTTTGCCAAATG
Flanking Amino Acid:
ERRILEAKQKGFVPFLVSAT
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
81.5
0.71
0.8
77.2
31.6
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
43.9
-0.6
2.3
55.27
46.5

Associated Gene:

Gene:
GAD2
Ensembl Gene ID:
ENSAPLG00000007020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007320
17199035 - 17235371
36337