About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17212490_17216017_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17212490 - 17216017
Intron Length:
3528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTAATATAACT
Flanking Amino Acid:
DSVILIRCDERGKMIPSDLE
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
83
0.74
0.8
76.2
37.8
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
53.4
0.19
1.8
75.89
40

Associated Gene:

Gene:
GAD2
Ensembl Gene ID:
ENSAPLG00000007020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007320
17199035 - 17235371
36337