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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17216098_17224165_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17216098 - 17224165
Intron Length:
8068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTGTT
5'SS Class:
major
3'SS Sequence:
TGTATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATAAAAT
Flanking Amino Acid:
PRLVAFTSEHSHFSVKKGAA
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
80
32.9
Major BPS
80
0.75
1
78.6
31
Major PPT
86.9
0.83
0.8
84.7
35.8
Minor 5ss
47.1
-0.3
3.2
70.8
39.9
Minor BPS
45.5
-0.2
2.1
66.19
43.2

Associated Gene:

Gene:
GAD2
Ensembl Gene ID:
ENSAPLG00000007020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007320
17199035 - 17235371
36337