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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17235082_17235224_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17235082 - 17235224
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGGG
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CCGTCCCCACGG
Flanking Amino Acid:
GSAAAESPGTARAWCQAAQK
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
60.1
42.1
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
27.2
-2.6
3.7
37.3
47.4
Minor BPS
35.9
-1.2
2.1
35.38
45.8

Associated Gene:

Gene:
GAD2
Ensembl Gene ID:
ENSAPLG00000007020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007320
17199035 - 17235371
36337