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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17241460_17244052_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17241460 - 17244052
Intron Length:
2593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAT
Flanking Amino Acid:
DDSTYYTLIHKSMQDEKRKP
Intron Amino Acid Position:
1005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
82.2
25.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
40.8
-1
3
53.7
43.8
Minor BPS
74.5
0.85
1.2
85.98
33.4

Associated Gene:

Gene:
MYO3A
Ensembl Gene ID:
ENSAPLG00000005895
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006171
17237294 - 17286092
48799