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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17244163_17252450_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17244163 - 17252450
Intron Length:
8288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TAAGCCTTACTT
Flanking Amino Acid:
DQHSSNVCQSVAAKVEDSRP
Intron Amino Acid Position:
968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
72.3
39.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.3
0.75
0.6
80.8
24.4
Minor 5ss
40.4
-1.1
3.3
55.5
48.6
Minor BPS
59.7
0.38
1.7
73.78
43.3

Associated Gene:

Gene:
MYO3A
Ensembl Gene ID:
ENSAPLG00000005895
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006171
17237294 - 17286092
48799