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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17252590_17253269_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17252590 - 17253269
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
ACATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATATAATAATG
Flanking Amino Acid:
PCDLAAFSRQISKLSEDYLA
Intron Amino Acid Position:
922

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
80.9
35.8
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
46.4
-0.4
1.9
55.42
39.5

Associated Gene:

Gene:
MYO3A
Ensembl Gene ID:
ENSAPLG00000005895
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006171
17237294 - 17286092
48799