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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17254249_17255302_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17254249 - 17255302
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
CTATTCCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TCAGCTATAATT
Flanking Amino Acid:
CKERRTFKRRRESLREKQTE
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
76.8
0.6
0.9
74.4
35.2
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
53.2
0.18
1.7
69.09
42.5

Associated Gene:

Gene:
MYO3A
Ensembl Gene ID:
ENSAPLG00000005895
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006171
17237294 - 17286092
48799