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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17259523_17261252_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17259523 - 17261252
Intron Length:
1730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTATA
5'SS Class:
major
3'SS Sequence:
TACTCTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TTAACTAGAACT
Flanking Amino Acid:
LDNWVLGKTKVFLKYYHVEQ
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
82.7
29.3
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
74.8
0.56
1
79
32.9
Minor 5ss
41.1
-1
2.8
51.7
39
Minor BPS
53.6
0.19
1.8
75.99
39.9

Associated Gene:

Gene:
MYO3A
Ensembl Gene ID:
ENSAPLG00000005895
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006171
17237294 - 17286092
48799