About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17261365_17263320_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17261365 - 17263320
Intron Length:
1956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACATTG
5'SS Class:
major
3'SS Sequence:
TATTTGTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCACCGTTAATG
Flanking Amino Acid:
HRILFANFIKRYYLICYKTN
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
63.7
43.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.1
0.68
0.8
78.2
36
Minor 5ss
47.6
-0.2
2.9
65.8
45.3
Minor BPS
50.2
-0.1
2.1
57.42
44.4

Associated Gene:

Gene:
MYO3A
Ensembl Gene ID:
ENSAPLG00000005895
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006171
17237294 - 17286092
48799