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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17263527_17266132_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17263527 - 17266132
Intron Length:
2606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGATAT
5'SS Class:
major
3'SS Sequence:
TCATTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGTTTTATAATC
Flanking Amino Acid:
KTQTVASYFRYSLMDLLSKM
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
71.4
35
Major BPS
100
1.24
0.5
100
0
Major PPT
85.7
0.8
0.8
80.8
30.9
Minor 5ss
40.9
-1
3.1
52.9
44.9
Minor BPS
56.6
0.19
1.5
65.84
33.5

Associated Gene:

Gene:
MYO3A
Ensembl Gene ID:
ENSAPLG00000005895
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006171
17237294 - 17286092
48799