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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17278837_17280880_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17278837 - 17280880
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTAATCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTATTTAATC
Flanking Amino Acid:
NTLLKPDKHLSGNDDGLNIG
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.7
0.74
0.9
76.6
37.2
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
69.7
0.6
1.4
76.01
34.1

Associated Gene:

Gene:
MYO3A
Ensembl Gene ID:
ENSAPLG00000005895
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006171
17237294 - 17286092
48799