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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17346201_17353099_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17346201 - 17353099
Intron Length:
6899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAATA
5'SS Class:
major
3'SS Sequence:
TAATTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AAATTTTTAATT
Flanking Amino Acid:
PNMHLSIGDQEPSFEMLPLT
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
71.9
39.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.4
0.59
0.9
69.9
40.9
Minor 5ss
41.5
-0.9
3.2
58
46.2
Minor BPS
69.5
0.69
1.1
75.84
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030844
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040563
17319349 - 17353661
34313