About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17373138_17374081_F

Intron Information:

Intron Rank:
137220
Intron Class:
major
Intron Phase:
Intron Coordinates:
17373138 - 17374081
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTC
5'SS Class:
strong_major
3'SS Sequence:
CATCCTCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTCTTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.9
34.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
66.4
0.37
0.9
59.4
36.5
Minor 5ss
41.1
-1
3.4
58.5
46.3
Minor BPS
70.8
0.64
1.7
81.67
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023892
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020522
17373057 - 17374087
1031