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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17404676_17406264_R

Intron Information:

Intron Rank:
138008
Intron Class:
major
Intron Phase:
Intron Coordinates:
17404676 - 17406264
Intron Length:
1589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
GTGCCGGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
89.9
0.9
0.6
88.2
21.5
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
43.2
-0.5
2.5
56.12
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021776
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030897
17403821 - 17407062
3242