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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17406441_17406964_R

Intron Information:

Intron Rank:
138009
Intron Class:
major
Intron Phase:
Intron Coordinates:
17406441 - 17406964
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
TTATGCTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
69.5
41.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.8
0.58
1
73.5
41.6
Minor 5ss
41.8
-0.9
3.2
63.7
40.8
Minor BPS
74.7
0.85
1.5
87.57
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021776
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030897
17403821 - 17407062
3242