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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17445748_17445873_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17445748 - 17445873
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GGTTCAAAAACA
Flanking Amino Acid:
QTPTNPDTGPEPEKNHPSQP
Intron Amino Acid Position:
978

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
76.7
0.6
0.9
73.9
36.1
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
46.8
-0.2
2.1
63.6
41.8

Associated Gene:

Gene:
GPR158
Ensembl Gene ID:
ENSAPLG00000005836
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006040
17445114 - 17634124
189011