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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17446697_17447459_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17446697 - 17447459
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATATATA
5'SS Class:
major
3'SS Sequence:
ATTTACTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ATTTACTTTACA
Flanking Amino Acid:
EHSLDPEDIRDELKKLYAQL
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
73
37.8
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
83.9
0.76
0.8
77.1
36.2
Minor 5ss
44.3
-0.6
2.7
50.5
46.1
Minor BPS
66.3
0.51
1.8
79.11
36.3

Associated Gene:

Gene:
GPR158
Ensembl Gene ID:
ENSAPLG00000005836
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006040
17445114 - 17634124
189011