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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17447607_17449584_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17447607 - 17449584
Intron Length:
1978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGGT
5'SS Class:
major
3'SS Sequence:
ATGCTTATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTATGAATG
Flanking Amino Acid:
VTVGLLLIPKFSHSSNNPRD
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
70.7
39.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.7
0.6
0.9
70.5
39.3
Minor 5ss
40.6
-1.1
3.2
58.8
45.7
Minor BPS
51.4
-0
1.8
60.93
41.3

Associated Gene:

Gene:
GPR158
Ensembl Gene ID:
ENSAPLG00000005836
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006040
17445114 - 17634124
189011