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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17453346_17465047_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17453346 - 17465047
Intron Length:
11702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTCTTCTCACAG
Flanking Amino Acid:
LDRWDYMMAVAEFLFLLWGV
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72.1
33.4
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
81.7
0.71
0.8
76.1
32.6
Minor 5ss
46.7
-0.3
2.4
56
43.5
Minor BPS
47
-0.3
2
56.14
45.3

Associated Gene:

Gene:
GPR158
Ensembl Gene ID:
ENSAPLG00000005836
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006040
17445114 - 17634124
189011