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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17465287_17495939_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17465287 - 17495939
Intron Length:
30653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAC
5'SS Class:
major
3'SS Sequence:
CTGAATTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTCTTTTTAATT
Flanking Amino Acid:
VYGTVTLKLHRVLKVFLSRT
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.9
38.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.5
0.51
0.9
69.6
41.2
Minor 5ss
40.7
-1
2.8
52.9
44.2
Minor BPS
71
0.74
1.2
78.3
39.3

Associated Gene:

Gene:
GPR158
Ensembl Gene ID:
ENSAPLG00000005836
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006040
17445114 - 17634124
189011