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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1747742_1749988_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1747742 - 1749988
Intron Length:
2247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TGCTGCTTATCT
Flanking Amino Acid:
YIHTNGPRKKKVTLHIKWPK
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
87.1
0.84
0.7
84.4
30.5
Minor 5ss
38.8
-1.3
3
53.4
43.7
Minor BPS
57
0.3
2.1
76.39
46

Associated Gene:

Gene:
DHX30
Ensembl Gene ID:
ENSAPLG00000015682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016419
1742829 - 1763102
20274