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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17496050_17525767_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17496050 - 17525767
Intron Length:
29718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TTCTGTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTCTCTCTATCT
Flanking Amino Acid:
LFGSLLLYFPVVILYFEPSV
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.2
38.6
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
81.3
0.7
0.8
76.5
32.3
Minor 5ss
35.7
-1.6
2.9
46.8
42.6
Minor BPS
50.8
0.1
2
71.91
45.3

Associated Gene:

Gene:
GPR158
Ensembl Gene ID:
ENSAPLG00000005836
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006040
17445114 - 17634124
189011