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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1753168_1753832_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1753168 - 1753832
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TGGTGTCTGACG
Flanking Amino Acid:
AAALACQKLKSLGLVDKNNN
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
84.9
0.78
0.7
79.7
25.7
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
44.5
-0.5
2.1
51.55
43.3

Associated Gene:

Gene:
DHX30
Ensembl Gene ID:
ENSAPLG00000015682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016419
1742829 - 1763102
20274