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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_17554813_17619508_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17554813 - 17619508
Intron Length:
64696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAA
U12 Branch Point Sequence:
ACTGCATTACTT
Flanking Amino Acid:
THRCHLNNSECMPIKGLGFV
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
67.8
0.44
1.1
69.6
37.5
Major PPT
84
0.76
0.7
79.9
25.6
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
48.6
-0
2
66.91
44.3

Associated Gene:

Gene:
GPR158
Ensembl Gene ID:
ENSAPLG00000005836
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006040
17445114 - 17634124
189011