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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1758329_1759158_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1758329 - 1759158
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGATTAA
U12 Branch Point Sequence:
GATTGCTAGATT
Flanking Amino Acid:
VLQIDAHGEPGGILCFLPGW
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
33.4
Major BPS
51.6
0.04
1.2
43.8
38.9
Major PPT
75
0.56
1
67.8
42.5
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
48.4
-0
2.1
68.31
43

Associated Gene:

Gene:
DHX30
Ensembl Gene ID:
ENSAPLG00000015682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016419
1742829 - 1763102
20274