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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1759264_1760304_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1759264 - 1760304
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGGGTTTTATCT
Flanking Amino Acid:
SQNSRYLVLPVHSNIPMMDQ
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.8
0.69
0.8
74
36.3
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
51.3
0.12
1.7
67.4
44

Associated Gene:

Gene:
DHX30
Ensembl Gene ID:
ENSAPLG00000015682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016419
1742829 - 1763102
20274